Cryo-EM structures of cardiac thin filaments reveal the 3D architecture of troponin

Troponin is an essential component of striated muscle and it regulates the sliding of actomyosin system in a calcium-dependent manner. Despite its importance, the structure of troponin has been elusive due to its high structural heterogeneity. In this study, we analyzed the 3D structures of murine cardiac thin filaments using a cryo-electron microscope equipped with a Volta phase plate (VPP). Contrast enhancement by a VPP enabled us to reconstruct the entire repeat of the thin filament. We determined the orientation of troponin relative to F-actin and tropomyosin, and characterized the interactions between troponin and tropomyosin. This study provides a structural basis for understanding the molecular mechanism of actomyosin system.     

Quantitative comparison of three rat models of Achilles tendon injury: A multidisciplinary approach

The Achilles tendon, while the strongest and largest tendon in the body, is frequently injured. Inconclusive evidence exists regarding treatment strategies for both complete tears and partial tears. Well-characterized animal models of tendon injury are important for understanding physiological processes of tendon repair and testing potential therapeutics. Utilizing three distinct models of rat Achilles tendon injury, the objective of this study was to define and compare the effects and relative impact on tendon properties and ankle function of both tear severity (complete tear versus partial tear, both with post-operative immobilization) and immobilization after partial tear (partial tear with versus without immobilization). We hypothesized that a complete tear would cause inferior post-injury properties compared to a partial tear, and that immediate loading after partial tear would improve post-injury properties compared to immobilization. All models were reproducible and had distinct effects on measured parameters. Injury severity drastically influenced tendon healing, with complete tear causing decreased ankle mobility and tendon mechanics compared to partial tears. One week of plantarflexion immobilization had a strong effect on animals receiving a partial tear. Tendons with partial tears and immobilization failed early during fatigue cycling three weeks post-injury. Partial tear without immobilization had no effect on ankle range of motion through dorsiflexion at any time point compared to the pre-surgery value, while partial tear with immobilization demonstrated diminished function at all post-injury time points. All three models of Achilles injury could be useful for tendon healing investigations, chosen based on the prospective applications of a potential therapeutic.     

Identifying high value areas for conservation: Accounting for connections among terrestrial,freshwater, and marine habitats in a tropical island system

Functional ecosystems depend on biotic and abiotic connections among different environmental realms, including terrestrial, freshwater, and marine habitats. Accounting for such connections is increasingly recognized as critical for conservation of ecosystems, especially given growing understanding of the way in which anthropogenic landscape disturbances can degrade both freshwater and marine habitats. This need may be paramount in conservation planning for tropical island ecosystems, as habitats across realms are often in close proximity, and because endemic organisms utilize multiple habitats to complete life histories. In this study, we used Marxan analysis to develop conservation planning scenarios across the five largest islands of Hawaii, in one instance accounting for and in another excluding habitat connectivity between inland and coastal habitats. Native vegetation, perennial streams, and areas of biological significance along the coast were used as conservation targets in analysis. Cost, or the amount of effort required for conservation, was estimated using an index that integrated degree and intensity of anthropogenic landscape disturbances. Our results showed that when connectivity is accounted for among terrestrial, freshwater, and marine habitats, areas identified as having high conservation value are substantially different compared to results when connectivity across realms is not considered. We also showed that the trade-off of planning conservation across realms was minimal and that cross-realm planning had the unexpected benefit of selecting areas with less habitat degradation, suggesting less effort for conservation. Our cross-realm planning approach considers biophysical interactions and complexity within and across ecosystems, as well as anthropogenic factors that may influence habitats outside of their physical boundaries, and we recommend implementing similar approaches to achieve integrated conservation efforts.     

A structured decision making analysis to increase a Red-cockaded Woodpecker population and balance stakeholder objectives for a National Forest

Longleaf pine (Pinus palustris) savanna is a biodiverse ecosystem native to the southeastern United States. Due to fire suppression and timber harvest, longleaf pine has declined to 3% of its original range. The extant forest provides habitat for many threatened and endangered species, including the endangered Red-cockaded Woodpecker (Picoides borealis; RCW), a cavity-nesting bird that co-evolved with fire-maintained forest, resulting in savanna-like old-growth forest as the bird’s preferred habitat. Our study site, the Oakmulgee Ranger District of the Talladega National Forest, harbors the largest RCW population in Alabama and is managed with an emphasis on RCW conservation. The United States Forest Service (USFS) also manages the Oakmulgee for uses such as wildlife conservation, recreation, and timber harvest. Despite efforts to restore RCW habitat and install artificial cavities in the Oakmulgee, the number of RCW groups has not exceeded 123, although the Recovery Plan objective is 394 groups. Our project was motivated by the USFS expressing interest in determining why the RCW population has not exceeded 123 groups. We proposed using structured decision making (SDM) with the USFS and other stakeholders to address this problem. Our goals were to explicitly define management objectives, build a Bayesian belief network with a model of how decision alternatives are believed to affect management objectives, and use a sensitivity analysis to determine the part of the model to which RCW population growth was most sensitive. Therefore, results from the analysis were expected to give insights into 1) ecological factors limiting RCW population growth, 2) how management can overcome these limits, plus 3) the relative expected ability of different decision alternatives to satisfy multiple objectives in addition to increasing RCW group number. We held four SDM workshops with representatives from the USFS, the Animal and Plant Health Inspection Service, the Longleaf Alliance, the Birmingham Audubon Society, and local residents. Stakeholder objectives consisted of maximizing the following: RCW group number, forest health, recreational enjoyment, community economic health, and aesthetics. Cavity insert installation had the greatest probability of increasing the number of RCW groups. The number of RCW groups was most affected by cavity availability, adult survival, reproductive output, food availability, and herbaceous understory. Prescribed burning was most likely to meet the combination of stakeholder objectives, followed by midstory removal. Our findings suggest that cavity installation efforts may need to be increased in the Oakmulgee to increase RCW group number. Also it could be beneficial to investigate how RCWs select cavity tree locations with the goal of increasing the chance that RCWs use artificial cavities to form new groups. The Bayesian belief network provided insights into factors limiting RCW population growth and how management can overcome these limits. The Bayesian belief network also can be used to prioritize management methods in the Oakmulgee given stakeholder objectives and time constraints.     

Influence of Different Abutment Designs on the Biomechanical Behavior of One-Piece Zirconia Dental Implants and Their Surrounding Bone: A 3D-FEA

BackgroundIn a dental implant/bone system, the design factors affect the value and distributions of stress and deformations that plays a pivotal role on the stability, durability and lifespan of the implant/bone system.ObjectiveThe aim of this study was to compare the influence of different abutment designs on the biomechanical behavior of one-piece zirconia dental implants and their surrounding bone tissues using three-dimensional finite element analysis.MethodsA three-dimensional geometrical model of a zirconia dental implant and its surrounding bone tissue were created. The occlusal loading force applied to the prosthetic abutments was a combination of 114.6 N in the axial direction, 17.1 N in the lingual direction and 23.4 N toward the mesial direction where these components represent masticatory force of 118.2 N in the angle of approximately 75° to the occlusal plane.ResultsThe system included implant abutment Model 01 showed a decrease of 9.58%, 9.92% and 3.62% at least in the average value of maximum von Mises stress compared to Model 02, Model 03 and Model 04 respectively. The results also showed that the system included implant abutment Model 01 decreases the average value of maximum deformation of 16.96%, 7.17% and 9.47% at least compared to Model 02, Model 03 and Model 04 respectively.ConclusionThe one-piece zirconia dental implant abutment Model 01 presents a better biomechanical behavior in the peri-implant bone than others. It can efficiently distribute the applied load and present more homogeneous behavior of stress distribution and has less deformation than others, which will enhance the stability of implant/bone system and prolong its lifespan.     

Morphological and morphometrical analysis of Heterodera spp. populations in Jordan

Phenotypic diversity of five Jordanian populations of cyst nematodes, Heterodera spp. collected from five regions from Jordan (Ar-Ramtha, Madaba, Dana, Al-Karak, and Jerash) was investigated. Soil samples were collected from one representative field in each region. Morphological and morphometrical characteristics revealed that Heterodera latipons is dominated in cereal fields at Ar-Ramtha, Madaba, Dana and Al-Karak regions and Heterodera schachtii in Jerash. Cysts populations from all cereal fields had bifenestrate vulval cone and a strong underbridge. Wherever, cysts of the cabbage population had ambifenestrate vulval cone with long vulval slit. The bullae were absent in Ar-Ramtha, Madaba and Dana populations, but present in Al-Karak and Jerash. Based on 12 morphometrical characters, the first three functions in canonical discriminant analysis accounted 99.3% of the total variation. Distance from dorsal gland duct opening to stylet base, underbridge length, a = L/W (body length/midbody width) and length of hyaline tail tip had strong and significant contributions in the first function. While the second function was strongly influenced by length of hyaline tail, fenestral length, fenestral width and tail length. However, the third canonical discriminate function was found to be influenced by stylet length, fenestral length, a = L/W (body length/midbody width) and underbridge width. The graphical representation of the distribution of the samples showed that the first canonical discriminant function clearly separated H. schachtii from Jerash from other populations. Whereas, H. latipons collected from Madaba and Dana were clearly separated in the second function. The results indicated that differences at morphological and morphometrical levels revealed diverse populations of Heterodera spp. in Jordan.     

Succession of mycorrhizal fungi in stands of Pinus sylvestris in the Netherlands

The mycorrhizal mycoflora was investigated in 35 stands of Pinus sylvestris in three types of young (4-13 yr) and three of old (50-80 yr) stands in the Netherlands, differing in number of rotations and soil type. A plot of 1050 m² (30 m x 35 m) within each stand was searched for carpophores during the autumns of 1986 and 1987. 10 soil samples per plot were taken in October 1987 in order to assess the mycorrhizal status of the tree roots. The composition of mycorrhizal mycoflora in the different plots was subjected to TWINSPAN cluster analysis and Detrended Correspondence Analysis. Plot groupings generated by these analyses largely parallelled the stand types, indicating that each stand type has its own mycoflora. Differences in myco-floristic composition between stand types were parallelled by differences in the composition of green vegetation. The young stand types had 3.5–27 x more carpophores and 1.4–6.8 x more species than two of the old stand types One old stand type was intermediate. Considerable differences in species composition between the young stand types were observed. It is concluded that the succession of mycorrhizal fungi is not primarily influenced by ageing of the trees, but rather by changes in the soil. The results were compared with data on changes in the occurrence of fruiting species of mycorrhizal fungi in the Netherlands during this century. It appeared that species which have declined according to these data were more frequent in the young plots than in the old plots. However, these species are reported to be frequent in old stands of P. sylvestris in Estonia and Finland. It is argued that this difference is related to the high nitrogen deposition in the Netherlands.     

Evaluation of automated analysis of 15N and total N in plant material and soil

Simultaneous determination of ¹⁵N and total N using an automated nitrogen analyser interfaced to a continuous-flow isotope ratio mass spectrometer (ANA-MS method) was evaluated. The coefficient of variation (CV) of repeated analyses of homogeneous standards and samples at natural abundance was lower than 0.1%. The CV of repeated analyses of ¹⁵N-labelled plant material and soil samples varied between 0.3% and 1.1%. The reproductibility of repeated total N analyses using the automated method was comparable to results obtained with a semi-micro Kjeldahl procedure. However, the automated method gave results which were 3% to 5% higher than those obtained with the Kjeldahl procedure. Since only small samples can be analysed, careful sample homogenization and fine grinding are very important. Evaluation of a diffusion method for preparing nitrate and ammonium in solution for automated ¹⁵N analysis showed that the recovery of inorganic N in the NH₃ trap was lower when the N was diffused from water than from 2 M KCl. The results also indicated that different proportions of the NO₃ ^- and the NH₄ ⁺ in aqueous solution were recovered in the trap after combined diffusion. The method is most suited for diffusing either NO₃ ^- or NH₄ ⁺ alone, but can be used for combined diffusion of the two ions.     

Orientation and foraging movements in a patchy environment by the ant Serrastruma lujae (formicidae-myrmicinae)

Serrastruma lujae ants individually search for collembolans in the leaf litter of humid tropical forests. During the dry season, collembolans aggregate in wet patches randomly scattered in the dry litter where numerous single workers come hunting from their nest. We simulated this situation in the laboratory, and observed that workers seem to be able to use the humidity gradient direction to efficiently orient themselves towards a wet patch. Once the patch has been reached, they exhibit area-concentrated searching,consisting, in particular, of adopting a high sinuosity and a low speed. After capturing a collembolan, the ants return to their nest along nearly straight paths. This ability may rely on a spatial memory of the nest location by means of a path-integration process. In the absence of prey, however, various behaviours were observed after an unsuccessful search. Comparisons between these data and the results obtained with a homogeneously wet environment simulating the rainy season situation showed that these ants do not simply respond to the humidity level but are also sensitive to the degree of patchiness of their environment. They can therefore be said to be able to adapt suitably to the considerable climatic changes they encounter during the year.